Publications with the Minor Lab Go to top

1. Czyzewski A, Krawiec F, Brzezinski D, Porebski PJ, Minor W (2021)
   Detecting anomalies in X-ray diffraction images using convolutional neural networks.
   Expert systems with applications (): 114740. [DOI:10.1016/j.eswa.2021.114740] [Pub Med ID: 34366575] [Pub Med Central ID: PMC8341115]
   WoS Times Cited: 7 ; Google Scholar Times Cited: 11
2. Brzezinski D, Porebski PJ, Kowiel M, Macnar JM, Minor W (2021)
   Recognizing and validating ligands with CheckMyBlob.
   Nucleic acids research (W1): W86-W92. [DOI:10.1093/nar/gkab296] [Pub Med ID: 33905501] [Pub Med Central ID: PMC8262754]
   WoS Times Cited: 6 ; Google Scholar Times Cited: 10
3. Mrugała B, Miłaczewska A, Porebski PJ, Niedzialkowska E, Guzik M, Minor W, Borowski T (2021)
   A study on the structure, mechanism, and biochemistry of kanamycin B dioxygenase (KanJ)-an enzyme with a broad range of substrates.
   The FEBS journal (4): 1366-1386. [DOI:10.1111/febs.15462] [Pub Med ID: 32592631] [Pub Med Central ID: PMC8034593]
   WoS Times Cited: 7 ; Google Scholar Times Cited: 10
4. Cooper DR, Grabowski M, Zimmerman MD, Porebski PJ, Shabalin IG, Woinska M, Domagalski MJ, Zheng H, Sroka P, Cymborowski M, Czub MP, Niedzialkowska E, Venkataramany BS, Osinski T, Fratczak Z, Bajor J, Gonera J, MacLean E, Wojciechowska K, Konina K, Wajerowicz W, Chruszcz M, Minor W (2020)
   State-of-the-Art Data Management: Improving the Reproducibility, Consistency, and Traceability of Structural Biology and in Vitro Biochemical Experiments.
   Methods in molecular biology (Clifton, N.J.) (): 209-236. [DOI:10.1007/978-1-0716-0892-0_13] [Pub Med ID: 33125653] [Pub Med Central ID: PMC8019398]
   WoS Times Cited: 4 ; Google Scholar Times Cited: 8
5. Kluza A, Wojdyla Z, Mrugala B, Kurpiewska K, Porebski PJ, Niedzialkowska E, Minor W, Weiss MS, Borowski T (2020)
   Regioselectivity of hyoscyamine 6β-hydroxylase-catalysed hydroxylation as revealed by high-resolution structural information and QM/MM calculations.
   Dalton transactions (Cambridge, England : 2003) (14): 4454-4469. [DOI:10.1039/d0dt00302f] [Pub Med ID: 32182320]
   WoS Times Cited: 17 ; Google Scholar Times Cited: 20
6. Porebski PJ, Bokota G, Venkataramany BS, Minor W (2020)
   Molstack: A platform for interactive presentations of electron density and cryo-EM maps and their interpretations.
   Protein science : a publication of the Protein Society (1): 120-127. [DOI:10.1002/pro.3747] [Pub Med ID: 31605409] [Pub Med Central ID: PMC6933852]
   WoS Times Cited: 7 ; Google Scholar Times Cited: 7
7. Grabowski M, Cymborowski M, Porebski PJ, Osinski T, Shabalin IG, Cooper DR, Minor W (2019)
   The Integrated Resource for Reproducibility in Macromolecular Crystallography: Experiences of the first four years.
   Structural dynamics (Melville, N.Y.) (6): 064301. [DOI:10.1063/1.5128672] [Pub Med ID: 31768399] [Pub Med Central ID: PMC6874509]
   WoS Times Cited: 23 ; Google Scholar Times Cited: 27
8. Czub MP, Venkataramany BS, Majorek KA, Handing KB, Porebski PJ, Beeram SR, Suh K, Woolfork AG, Hage DS, Shabalin IG, Minor W (2019)
   Testosterone meets albumin - the molecular mechanism of sex hormone transport by serum albumins.
   Chemical science (6): 1607-1618. [DOI:10.1039/c8sc04397c] [Pub Med ID: 30842823] [Pub Med Central ID: PMC6371759]
   WoS Times Cited: 37 ; Google Scholar Times Cited: 53
9. Kowiel M, Brzezinski D, Porebski PJ, Shabalin IG, Jaskolski M, Minor W (2019)
   Automatic recognition of ligands in electron density by machine learning.
   Bioinformatics (Oxford, England) (3): 452-461. [DOI:10.1093/bioinformatics/bty626] [Pub Med ID: 30016407] [Pub Med Central ID: PMC6361236]
   WoS Times Cited: 20 ; Google Scholar Times Cited: 28
10. Grabowski M, Shabalin I, Porebski PJ, Domagalski MJ, Zheng H, Cooper D, Venkataramany BS, Bourne PE, Minor W (2019)
    Data Sharing in Structural Biology: Advances and Challenges
    in Data Sharing: Recent Progress and Remaining Challenges - Computer Science, Technology and Applications, Nova Science Publishers, New York (): 29-68.
    Google Scholar Times Cited: 28
11. Czub MP, Zhang B, Chiarelli MP, Majorek KA, Joe L, Porebski PJ, Revilla A, Wu W, Becker DP, Minor W, Kuhn ML (2018)
    A Gcn5-Related N-Acetyltransferase (GNAT) Capable of Acetylating Polymyxin B and Colistin Antibiotics in Vitro.
    Biochemistry (51): 7011-7020. [DOI:10.1021/acs.biochem.8b00946] [Pub Med ID: 30499668] [Pub Med Central ID: PMC6474815]
    WoS Times Cited: 10 ; Google Scholar Times Cited: 16
12. Wlodawer A, Dauter Z, Porebski PJ, Minor W, Stanfield R, Jaskolski M, Pozharski E, Weichenberger CX, Rupp B (2018)
    Detect, correct, retract: How to manage incorrect structural models.
    The FEBS journal (3): 444-466. [DOI:10.1111/febs.14320] [Pub Med ID: 29113027] [Pub Med Central ID: PMC5799025]
    WoS Times Cited: 45 ; Google Scholar Times Cited: 56
13. Shabalin IG, Porebski PJ, Minor W (2018)
    Refining the macromolecular model - achieving the best agreement with the data from X-ray diffraction experiment.
    Crystallography reviews (4): 236-262. [DOI:10.1080/0889311X.2018.1521805] [Pub Med ID: 30416256] [Pub Med Central ID: PMC6219471]
    WoS Times Cited: 33 ; Google Scholar Times Cited: 52
14. Porebski PJ, Sroka P, Zheng H, Cooper DR, Minor W (2018)
    Molstack-Interactive visualization tool for presentation, interpretation, and validation of macromolecules and electron density maps.
    Protein science : a publication of the Protein Society (1): 86-94. [DOI:10.1002/pro.3272] [Pub Med ID: 28815771] [Pub Med Central ID: PMC5734276]
    WoS Times Cited: 26 ; Google Scholar Times Cited: 30
15. Zheng H, Cooper DR, Porebski PJ, Shabalin IG, Handing KB, Minor W (2017)
    CheckMyMetal: a macromolecular metal-binding validation tool.
    Acta crystallographica. Section D, Structural biology (Pt 3): 223-233. [DOI:10.1107/S2059798317001061] [Pub Med ID: 28291757] [Pub Med Central ID: PMC5349434]
    WoS Times Cited: 227 ; Google Scholar Times Cited: 329
16. Zheng H, Porebski PJ, Grabowski M, Cooper DR, Minor W (2017)
    Databases, Repositories, and Other Data Resources in Structural Biology.
    Methods in molecular biology (Clifton, N.J.) (): 643-665. [DOI:10.1007/978-1-4939-7000-1_27] [Pub Med ID: 28573593] [Pub Med Central ID: PMC5587190]
    WoS Times Cited: 5 ; Google Scholar Times Cited: 12
17. Grabowski M, Langner KM, Cymborowski M, Porebski PJ, Sroka P, Zheng H, Cooper DR, Zimmerman MD, Elsliger MA, Burley SK, Minor W (2016)
    A public database of macromolecular diffraction experiments.
    Acta crystallographica. Section D, Structural biology (Pt 11): 1181-1193. [DOI:10.1107/S2059798316014716] [Pub Med ID: 27841751] [Pub Med Central ID: PMC5108346]
    WoS Times Cited: 95 ; Google Scholar Times Cited: 93
18. Niedzialkowska E, Gasiorowska O, Handing KB, Majorek KA, Porebski PJ, Shabalin IG, Zasadzinska E, Cymborowski M, Minor W (2016)
    Protein purification and crystallization artifacts: The tale usually not told.
    Protein science : a publication of the Protein Society (3): 720-33. [DOI:10.1002/pro.2861] [Pub Med ID: 26660914] [Pub Med Central ID: PMC4815408]
    WoS Times Cited: 39 ; Google Scholar Times Cited: 66
19. Porebski PJ, Cymborowski M, Pasenkiewicz-Gierula M, Minor W (2016)
    Fitmunk: improving protein structures by accurate, automatic modeling of side-chain conformations.
    Acta crystallographica. Section D, Structural biology (Pt 2): 266-80. [DOI:10.1107/S2059798315024730] [Pub Med ID: 26894674] [Pub Med Central ID: PMC4756610]
    WoS Times Cited: 26 ; Google Scholar Times Cited: 27
20. Chruszcz M, Mikolajczak K, Mank N, Majorek KA, Porebski PJ, Minor W (2013)
    Serum albumins-unusual allergens.
    Biochimica et biophysica acta (12): 5375-81. [DOI:10.1016/j.bbagen.2013.06.016] [Pub Med ID: 23811341] [Pub Med Central ID: PMC4419372]
    WoS Times Cited: 93 ; Google Scholar Times Cited: 138
21. Majorek KA, Porebski PJ, Dayal A, Zimmerman MD, Jablonska K, Stewart AJ, Chruszcz M, Minor W (2012)
    Structural and immunologic characterization of bovine, horse, and rabbit serum albumins.
    Molecular immunology (3-4): 174-82. [DOI:10.1016/j.molimm.2012.05.011] [Pub Med ID: 22677715] [Pub Med Central ID: PMC3401331]
    WoS Times Cited: 724 ; Google Scholar Times Cited: 1,062
22. Shabalin IG, Porebski PJ, Cooper DR, Grabowski M, Onopriyenko O, Grimshaw S, Savchenko A, Chruszcz M, Minor W (2012)
    Structure of anabolic ornithine carbamoyltransferase from Campylobacter jejuni at 2.7 Å resolution.
    Acta crystallographica. Section F, Structural biology and crystallization communications (Pt 9): 1018-24. [DOI:10.1107/S1744309112031259] [Pub Med ID: 22949186] [Pub Med Central ID: PMC3433189]
    WoS Times Cited: 5 ; Google Scholar Times Cited: 5
23. Chruszcz M, Chapman MD, Osinski T, Solberg R, Demas M, Porebski PJ, Majorek KA, Pomés A, Minor W (2012)
    Alternaria alternata allergen Alt a 1: a unique β-barrel protein dimer found exclusively in fungi.
    The Journal of allergy and clinical immunology (1): 241-7.e9. [DOI:10.1016/j.jaci.2012.03.047] [Pub Med ID: 22664167] [Pub Med Central ID: PMC3391610]
    WoS Times Cited: 78 ; Google Scholar Times Cited: 125
24. Niedzialkowska E, Wang F, Porebski PJ, Minor W, Higgins JM, Stukenberg PT (2012)
    Molecular basis for phosphospecific recognition of histone H3 tails by Survivin paralogues at inner centromeres.
    Molecular biology of the cell (8): 1457-66. [DOI:10.1091/mbc.E11-11-0904] [Pub Med ID: 22357620] [Pub Med Central ID: PMC3327328]
    WoS Times Cited: 47 ; Google Scholar Times Cited: 71
25. Chruszcz M, Pomés A, Glesner J, Vailes LD, Osinski T, Porebski PJ, Majorek KA, Heymann PW, Platts-Mills TA, Minor W, Chapman MD (2012)
    Molecular determinants for antibody binding on group 1 house dust mite allergens.
    The Journal of biological chemistry (10): 7388-98. [DOI:10.1074/jbc.M111.311159] [Pub Med ID: 22210776] [Pub Med Central ID: PMC3293536]
    WoS Times Cited: 76 ; Google Scholar Times Cited: 104
26. Porebski PJ, Klimecka M, Chruszcz M, Nicholls RA, Murzyn K, Cuff ME, Xu X, Cymborowski M, Murshudov GN, Savchenko A, Edwards A, Minor W (2012)
    Structural characterization of Helicobacter pylori dethiobiotin synthetase reveals differences between family members.
    The FEBS journal (6): 1093-105. [DOI:10.1111/j.1742-4658.2012.08506.x] [Pub Med ID: 22284390] [Pub Med Central ID: PMC3392494]
    WoS Times Cited: 12 ; Google Scholar Times Cited: 19
27. Zheng H, Filippova EV, Tkaczuk KL, Dworzynski P, Chruszcz M, Porebski PJ, Wawrzak Z, Onopriyenko O, Kudritska M, Grimshaw S, Savchenko A, Anderson WF, Minor W (2012)
    Crystal structures of putative phosphoglycerate kinases from B. anthracis and C. jejuni.
    Journal of structural and functional genomics (1): 15-26. [DOI:10.1007/s10969-012-9131-9] [Pub Med ID: 22403005] [Pub Med Central ID: PMC4485498]
    Google Scholar Times Cited: 8
28. Cooper DR, Porebski PJ, Chruszcz M, Minor W (2011)
    X-ray crystallography: Assessment and validation of protein-small molecule complexes for drug discovery.
    Expert opinion on drug discovery (8): 771-782. [DOI:10.1517/17460441.2011.585154] [Pub Med ID: 21779303] [Pub Med Central ID: PMC3138648]
    WoS Times Cited: 49 ; Google Scholar Times Cited: 75
29. Klimecka MM, Chruszcz M, Font J, Skarina T, Shumilin I, Onopryienko O, Porebski PJ, Cymborowski M, Zimmerman MD, Hasseman J, Glomski IJ, Lebioda L, Savchenko A, Edwards A, Minor W (2011)
    Structural analysis of a putative aminoglycoside N-acetyltransferase from Bacillus anthracis.
    Journal of molecular biology (3): 411-23. [DOI:10.1016/j.jmb.2011.04.076] [Pub Med ID: 21601576] [Pub Med Central ID: PMC3131501]
    WoS Times Cited: 12 ; Google Scholar Times Cited: 18

Structures with the Minor Lab Go to top