Harrison Distinguished Professor of Molecular Physiology and Biological Physics
- Office: 4240 Pinn Hall - (434) 243-6865
- Lab 1 (desks, wetlab entrance): 4223 Pinn Hall - (434) 924-2948
- Lab 2 (desks, coffee): 4224 Pinn Hall - (434) 243-0033
- Fax: (434) 243-2981
- E-mail: wladek@iwonka.med.virginia.edu
- Directions to the laboratory (in PDF format)
- Map to the laboratory
- Lab 1 (desks, wetlab entrance): 4223 Pinn Hall - (434) 924-2948
- Lab 2 (desks, coffee): 4224 Pinn Hall - (434) 243-0033
- Fax: (434) 243-2981
- E-mail: wladek@iwonka.med.virginia.edu
- Directions to the laboratory (in PDF format)
- Map to the laboratory
|
Molecular Physiology and Biological Physics University of Virginia 1340 Jefferson Park Avenue Pinn Hall (formerly Jordan Hall) Room 4223 Charlottesville, VA 22908 |
|
Molecular Physiology and Biological Physics University of Virginia PO Box 800736 Charlottesville, VA 22908-073 - Directions to the laboratory (in PDF format) - Map to the laboratory |
Dariusz Brzezinski
Visiting Professor darek_b@iwonka.med.virginia.edu
3 publications with the Minor Lab
Visiting Professor darek_b@iwonka.med.virginia.edu
3 publications with the Minor Lab
David Cooper
Instructor dcoop@iwonka.med.virginia.edu
18 publications with the Minor Lab
54 structures with the Minor Lab
Instructor dcoop@iwonka.med.virginia.edu
18 publications with the Minor Lab
54 structures with the Minor Lab
Marcin Cymborowski
Instructor of Research marcel@iwonka.med.virginia.edu
36 publications with the Minor Lab
149 structures with the Minor Lab
Instructor of Research marcel@iwonka.med.virginia.edu
36 publications with the Minor Lab
149 structures with the Minor Lab
Mateusz Czub
Graduate Student mateusz_c@iwonka.med.virginia.edu
4 publications with the Minor Lab
11 structures with the Minor Lab
Graduate Student mateusz_c@iwonka.med.virginia.edu
4 publications with the Minor Lab
11 structures with the Minor Lab
Marek Grabowski
Research Scientist marek@iwonka.med.virginia.edu
17 publications with the Minor Lab
18 structures with the Minor Lab
Research Scientist marek@iwonka.med.virginia.edu
17 publications with the Minor Lab
18 structures with the Minor Lab
Ivan Shabalin
Research Scientist ivan_s@iwonka.med.virginia.edu
25 publications with the Minor Lab
105 structures with the Minor Lab
Research Scientist ivan_s@iwonka.med.virginia.edu
25 publications with the Minor Lab
105 structures with the Minor Lab
Heping Zheng
Research Scientist (Part time) dust@iwonka.med.virginia.edu
35 publications with the Minor Lab
47 structures with the Minor Lab
Research Scientist (Part time) dust@iwonka.med.virginia.edu
35 publications with the Minor Lab
47 structures with the Minor Lab
113 trainees are listed.
-
TraineeCurrent/
PastTraining PeriodPrior
InstitutionPriori
DegreeYear of Prior DegreeProject TitleLast Known Position
-
Past2014, PhDUniversity of Warsaw, PolandMSc2011Small Molecule Ligands in Protein StructuresElectron Microscopy Core Facility Manager, Warsaw University, Poland
-
Past2010-11, MSc
2012-12, Research AssistantLodz University of Technology, PolandBSc2010Automated Crystal Recognition with Haar-like Features and Hough TransformHealth Systems Software Engineer II, Vanderbilt University, USA -
Past2011, PostdocUniversity of VirginiaPhD2011Crystallization, ThermoFluor assay development for protein/protein & protein/ligand interactionsPostdoctoral Associate, Rockefeller University, USA
-
Past1998-00, Research AssistantUniversity of WarsawMSc1998CrystallizationHigh School Teacher, Poland
-
Present2018, 2019-Poznan University of TechnologyPh.D.Ligand Placement using Machine LearningAssistant Professor in the Institute of Computing Science at Poznan University of Technology
-
Past2004University of LodzMScData managementAssistant Professor, University of Lodz, Lodz, Poland
-
Past2009-10, Research AssistantUniversityof Virginia2009Ligands in protein structuresMD Resident; Icahn School of Medicine at Mount Sinai, New York, USA
-
Past2014University of VirginiaBSc2013Structure determination of Enylo-CoA Hydratase from pathogenic bacteriaResident Physician, UNC Health Care, USA
-
Past2014, Summer StudentUniversity of VirginiaBSc2017Structure determination of proteins from pathogenic bacteriaMD Candidate, University of Virginia School of Medicine, USA
-
Past2012, Research ScientistUniversity of Pune, IndiaPhD1992Protein structure and function; collaborated on CheckMyMetalVisiting Assistant Professor, Department of Radiology and Medical Imaging, University of Virginia, USA
-
Past2016-2018University of Virginian/an/aAdministrative HelperAssociate at Chess Consulting, Washington DC, USA
-
Past1996, Visiting Student
2002-08, Postdoc
2008-11, Instructor
2011-12, Research Assistant ProfessorJagiellonian University, PolandPhD2002Structural Biology, AllergensAssociate Professor, University of South Carolina, USA -
Present2010-presentPurdue UniversityPhD2000Structure Determination and Database DevelopmentInstructor, University of Virginia, Charlottesville, USA
-
Present1999-01, MSc
2001-12, Research Assistant
2012-present, Research ScientistWarsaw University, PolandBSc1999X-ray Studies of the Structure of Soybean 15-Lipoxygenase MutantsResearch Scientist, University of Virginia -
Present2016-2017, MSc 2017-present, PhDJagiellonian UniversityB.Sc.2015AlbuminsGraduate student
-
Past2011-13, Undergraduate studentUniversity of VirginiaBSc2011Structural studies of serum albumins, software developmentResident Physician, University of Chicago, USA
-
Past2012-14University of ConnecticutBSProtein crystallization and SAXSGraduate Student, University of Virginia, USA
-
Past2005Refinement of ligands and small moleculesChemistry Department, University of Warsaw, Poland
-
Past2008-13, PhD 2017-2018, PostdocAdam Mickiewicz University, PolandMSc2008BioinformaticsBioinformatics Scientist, Enterprise Science and Computing, Inc., Precision medicine, USA
-
Past2006-07, Undergraduate StudentN/AN/AN/ASmall molecule crystallization
-
Past2011, MScTechnical University of Denmark, DenmarkBSc2006Development of advanced interfaces for pipetting robot operation and protein visualizationStatens Serum Institut, Center for Biological Sequence Analysis, Denmark
-
Present2019 -N/AN/AN/A
-
Past2004-05, PhD
2007-08, PostdocInstitute of Molecular Biology at Russian Academy of SciencesMSc, PhDCrystal structures of mutant forms of NAD+-dependent formate dehydrogenase from methylotrophic bacterium Pseudomonas sp. 101.Research Professional, University of Chicago, USA -
Past2008-15Washington University in St. LouisPhD1985Docking StudiesVisiting Assistant Professor - CADD
-
Past2009-12Technical University of LodzMSc2009Development of LabDB and PSI:Publications PortalSoftware Developer at Path Intelligence, UK
-
Past2004University of Ljubljana, SloveniaPhDProtein structure and functionPostdoctoral Associate, Josef Stefan Institute, Ljubljana, Slovenia
-
Past2014, MSc
2015, Research AssistantVU University of Amsterdam, NetherlandsBSc, MSc2013Crystal structure determination of RNA polymerase sigma-70 factor from Planctomyces limnophilus DSM 3776Hampton Creek Inc., San Fancisco, USA -
Past2013, Summer StudentUniversity of VirginiaBSc2015Structure determination of proteins from pathogenic bacteriaMD Candidate, VCU School of Medicine, USA
-
Past2012Politechnika Łódzka / Technical University of LodzMSc2011Designing and optimizing large structural biology databases and user interfacesSoftware Sorcerer at Slab, San Francisco, USA
-
Past2009University of Warsaw, PolandBSc2009Crystal structure of a putative isochorismatase hydrolase from Oleispira antarcticaGraduate Student, University of Warsaw, Poland
-
Past2015-17, Undergraduate studentN/AN/AN/ADatabase of lab collaborators; automatic acquisition of chemical annotationsMSTP Student, Vanderbilt University, USA
-
Present2002-present, Research ScientistVirginia TechPhD1993Data Management; DatabasesResearch Scientist, University of Virginia
-
Past2001-02, PostdocWroclaw University of Technology, PolandPhD2001Bioinformatics and functional analysis of protein structuresAssosciate Professor, University of Michigan, USA
-
Past2005-09University of WarsawPhDSimilarity of models, ligand flexibilityAssociate Professor, University of Warsaw
-
Past2011-2012, MSc 2011-2016, PhDAdam Mickiewicz University, PolandMSc2011Structural and functional studies of serum albumins.Broad Institute, Boston, Massachusets, USA
-
Past2010-18Sichuan University, China; Sun Yat-Sen University,ChinaPhD2006Structural and functional studies of fatty acid synthesis enzymes from pathogenic bacteriaMartha Jefferson Hospital, Charlottesville, USA
-
Past2014, Summer StudentN/AN/AN/AData managementUndergraduate Student; Virginia Tech, Blacksburg, USA
-
Past2008-09, MScWarsaw University of Technology,Warsaw, PolandBSc2008Bioinformatics and Functional Analysis of Protein StructuresCitibank, London, UK
-
PastCarnegie MellonBScRole of databases in structure deteminationGoogle, Inc., USA
-
Past2004-08St. Petersburg State UniversityPh.D.Structure validation, SAD phasingData Driven Applications Developer/Architect, ON Semiconductors, Portland, OR, USA
-
Past2008-10 PostdocInstitute of Biochemistry and Biophysics Polish Academy of SciencesPhD2006Anthrax proteinsSenior Postdoctoral Research Associate, Institute of Biochemistry and Biophysics Polish Academy of Sciences
-
Past2007-08, MSc
2007-12, PhDLodz University, PolandBSc2007Application of Molecular Biology techniques to the process of three dimensional structure elucidation by X-ray crystallographyJunior Validation and Qualification Specialist. Mabion S.A, Poland -
Past2000-01University of WarsawN/ASoftware developmentResearch Associate, Centre of New Technologies,University of Warsaw
-
Past2004-05, MSc
2005-07, PhDLodz University of Technology PolandBSc2004Crystal Structure of a Transcriptional Regulator TM1030 from Thermotoga maritimaKey Account Manager, Wroclaw Research Centre EIT+ Ltd, Poland -
Past2013-14, Research AssistantJagiellonian UniversityMSc2012Database and website developmentSenior Software Architect at B2BON, Poland
-
Past2015, PhDPoznan University of Medical Sciences, Poznan, PolandMSc2011BioinformaticsAdam Mickiewicz University, Poznan, Poland
-
Past2015University of WarsawPhD2007SKILLS – Internships of the Foundation for Polish ScienceAssistant Professor,University of Warsaw
-
Past2014-16, Undergraduate studentUniversity of VirginiaBSc2016Structure determination of proteins from pathogenic bacteriaEdward Via College of Osteopathic Medicine (VCOM) in Blacksburg, USA
-
Past2013, PostdocUniversiteit LeidenPhD2010Bioinformatics, computational chemistry, protein structure solution from pathogenic bacteriaGoogle, Inc, Mountain View, USA
-
Past2003-04, MScRzeszow Technical University, PolandBSc2003Bioinformatics Application to Structural GenomicsBusiness & System Analyst, Luxoft, Inc.
-
Past2004N/AN/AN/AOptimizing Precision and Reproducibility of Solution Preparation Through Automation and Data ManagementData Analytics at Facebook, San Francisco, USA
-
Past2016-2018, Undergraduate studentUniversity of VirginiaBSc2018Structure determination of various enzymes from the AKR superfamily
-
Past1996, PostdocJagellonian University, Cracow, PolandPhDLipoxygenaseProfessor, Jagellonian University, Cracow, Poland
-
Present2017-presentPeking UniversityBADatabase MaintenanceResearcher
-
Past2018Jagiellonian UniversityPhD2011Crystallization of protein-ligand complexesAssistant Professor, Jagiellonian University, Cracow, Poland
-
Past2008Hong Kong Baptist UniversityPhD2006Protein structure and functionAssociate Dean,School of Pharmaceutical Science, Sun Yat-Sen University, China
-
Past2011-14Boston UniversityMScData management solutionsLaboratory Engineer, Structural Genomics Consortium, Oxford, UK
-
Past2019Interdisciplinary Laboratory of Biological Systems ModellingMSc2016Clustering of macromolecular ligandsGraduate Student, University of Warsaw
-
Past2008-15, PhDAdam Mickiewicz University, PolandMSc2008Structure-function Relationships of Macromolecular StructuresResearch Scientist at The Beatson Institute for Cancer Research, Glasgow, Scotland, UK
-
Past2005University of WarsawMSc2004Small molecule ligandsSenior Researcher, Chemistry Department, University of Warsaw
-
Past2014-15, Undergraduate studentUniversity of VirginiaBSc2016Structure determination of proteins from pathogenic bacteriaMD Candidate, F. Edward Hébert School of Medicine, USA
-
Past2016, PoctdocInternational Institute of Molecular and Cellular BiologyPhD2014Structural, Biochemical, and Evolutionary Characterizations of Glyoxylate/Hydroxypyruvate ReductasesResearch Associate at University College London, London, UK
-
Past2014Warsaw University of Technology, Poland;BSc2013Protein structure determinationPhD student / Project MAnager/ Optimist /Blogger - University of Nottingham
-
Past2016-19, Undergraduate studentUniversity of VirginiaBSc2019Dihydroorotase as a potential drug target to inhibit pyrimidine biosynthesis in pathogensMD candidate, Eastern Virginia Medical School, USA
-
Past2011-12, PhDMaria Curie-Sklodowska University, Lublin, PolandMSc2010Studies on structure and catalytic reaction mechanisms of selected non-heme metalloenzymes.AGH University of Science and Technology and J. Haber Institute of Catalysis and Surface Chemistry, Polish Academy of Sciences, Cracow, Poland
-
Past2008Adam Mickiewicz University, PolandMSc2008Bioinformatic analysis of USP proteins familySenior Scientist Bioinformatics & Data Science at Ardigen S.A.
-
Past2004Wet lab help
-
Past2008N/AN/AN/ASmall molecule structure determination and data management for CSGIDGoogle, Inc, Mountain View, USA
-
Past1998-2003Utkal University, Orissa, IndiaMScSoftware developmentSoftware Engineer, Xinnovation Inc.
-
Past2012Universidad Politecnica de Valencia, SpainBSc2010Structure-function Relationships of Macromolecular StructuresFull Stack Developer at Nuteca, Spain
-
Past2017,2018,2019Jagiellonian University, Cracow, PolandMScBiochemical and structural characterization of molybdoenzymesGraduate Student
-
Past2008Jagiellonian UniversityPhD2002Structural BioinformaticsAssociate Professor, Jagiellonian University, Kraków
-
Past2010University of York, UKMSc2007Structural characterization of H. pylori dethiobiotin synthetase reveals differences between family membersResearch Fellow, MRC Cambridge, UK
-
Past2009-13, PhD
2017-present, PostdocJagiellonian University, PolandMSc, PhD2009The influence of posttranslational modifications on interaction between histone H3 and Survivin.Research Associate, University of Virginia -
Past2008, MScWarsaw University, PolandBSc2007Studies of structural genomics targetsClinical Research Coordinator (CRC), Kantonsspital Winterthur, Switzerland
-
Past2008-15, PhD
2016-present, PostdocAdam Mickiewicz University, PolandMSc2008Structure-function Relationships of Macromolecular StructuresResearch Assistant, University of Virginia -
Past2012, Summer StudentWroclaw University, PolandBSc2011Protein structure determinationChemist, Macopharma, Poland
-
Past2004, Summer Student
2005-06, MSc
2006-12, PhDBSc:Warsaw University, Poland; MSc:Warsaw University, PolandBSc2004MSc: Crystal Structures of TM0549 and NE1324--Two Orthologs of E. Coli AHAS Isozyme III Small Regulatory Subunit; PhD: NRMT: An alpha-N-methyl transferaseResearcher, MIT, USA -
Past2010Technical University RzeszowMSc2009Software developmentIT Manager, YesIndeed
-
Past2003-04, MScRzeszow Technical University, PolandBSc2003Theoretical and Practical Application of Computational Clusters in Structural GenomicsRzeszow Technical University, Poland
-
Past2008-09, MSc
2009-13, PhD
2017-present PostdocJagiellonian University,PolandMSc, PhD2008Improvement of model building and refinement of macromolecular crystal structuresResearch Associate, University of Virginia -
Past2005-07Technical University of Lodz, PolandN/AN/ADevelopment of a wetlab systemPostdoctoral Fellow, Lund University, Sweden
-
Past2004-05MSChildren's Hospital of Philadelphia
-
Past2008-2010BScData management, HKL-2000Lead Platform Engineer, NPSC at University of Dundee
-
Past2008-09, MScLodz University of Technology, PolandBSc2007High output X-ray CrystallographyGraduate Student, Lodz University of Technology, Poland
-
Past2008Charles University, Czech RepublicMSc2006High output X-ray CrystallographyPostdoctoral Fellow, Academy of Sciences of the Czech Republic, Czech Republic
-
Present2011-14, Postdoc
2014-present, Research ScientistLomonosov Moscow State University (MSU), Russia; Russian Academy of Science, A.N. Bach Institute of Biochemistry,RussiaPhD2010Structural studies of proteins from pathogenic organisms; development of crystallization methods; classification of magnesium binding sites in RNAResearch Scientist, University of Virginia -
Past2005-15Institute of Biochemistry, Russian Academy of SciencesPhD1993Determination of unknown protein functions. Structural and functional analysis of diverse proteins.Clinical Research Coordinator Trainee, Department of Surgery, University of Virginia School of Medicine
-
Past2008Patna University, India; Banasthali Vidyapith, India; Northeastern UniversityBSc2006Bioinformatics analysis of the family of transcriptional regulators solved by structural genomics projectsBioinformatics Analyst, Stanford University School of Medicine
-
Past2016-17, PhDJagiellonian UniversityMSc2015Crystallization of proteins from critical pathogensPost-doc, Jagiellonian University
-
Past2007-08, MScWarsaw UniversityBSc2007The role of the Surface Lysine Methylation rescue method in protein crystallizationSenior Scientist, University of Zurich, Switzerland
-
Past2012Virginia Polytechnic Institute and State UniversityMSc2010Structure determination of allergenic proteinsResident Physician, University of Virginia School of Medicine
-
Past2002-03National Institute for Medical Reseacrh, UKPhD1996Structural studies of bacterial metalloenzymesSenior Lecturer, School of Cellular and Molecular Medicine, University of Bristol
-
Past2014-15, MSc
2015-17 Research ScientistJagiellonian University, PolandBSc, MSc2014Development of chemical storage database in LabDB. Structure determination and functional studies of D-isomer specific 2-hydroxyacid dehydrogenase from various bacteria.Software Developer, ReloRides, UK -
Past2015-18, Undergraduate studentUniversity of VirginiaBSc2018AlbuminsProduct manager, Johnson Matthey Pharmaceutical, West Deptford, NJ, USA
-
Past2013-14, PostdocWarsaw University of Technology, PolandPhD2012Structure of human ferritin and its relation to Parkinson diseaseStaff Research Scientist at St. Jude Children's Research Hospital
-
Past2016-18, PhDJagiellonian University, KrakowMSc2015Structure determination of proteins from AKR and PyrC familiesGraduate Research Assistant, Jagiellonian University, Krakow, Poland
-
Past2009-10
2010-2014Technical University of Lodz/International Institute of Cell & Molecular Biology, PolandPhD2010Structure-function Relationships of Macromolecular StructuresBusiness Development Director, Ardigen -
Past1997-00, PostdocUniversity of WisconsinPhD1993Structure-function studies of Soybean Lipoxygenase-1, development of sulfur-SAD phasing methods.Professor, UT Southwestern Medical Center, USA
-
Past2008-10University of VirginiaBSc2005Researcher/Web developerPublic Affair Specialist, National Park Service, Washington DC, USA
-
Past2017Academia SinicaPh.D.Structural Bioinformatics and Structural BiologyProfessor, National Taiwan Ocean University
-
Past2015-19, Undergraduate studentUniversity of VirginiaBSc2019AlbuminsMD Candidate, University of Toledo College of Medicine and Life Sciences, Toledo, USA
-
Past2011-14Mount Holyoke CollegeA.B.2002Data curation
-
Past2010-11, MScLodz University of Technology, PolandBSc2010Interaction between the LabDB database and laboratory equipmentScientist at Blue Brain Nexus, Basel, Switzerland
-
Past2004-08Washington State UniversityMSc2001Structure determination, bioinformatics, and data managementDirector of Data Administration District of Columbia Public Schools
-
Past2019University of VirginiaN/AN/AMacromolecular crystallographyUndergraduate Researcher
-
Past2013, Undergraduate studentN/AN/AN/AMetabolite cocktail screeningEngagement Manager, Professional Services at Medallia
-
Past2017-19, PostdocUniversity of WarsawPhD2017Database of drug-protein interactionsResearch Associate Professor, Warsaw University
-
Past2010-11, MScLodz University of Technology, PolandBSc2008A database approach to protein function-structure relation studies.Chief Technical Officer at Tulchan Analytics, UK
-
Past2019Jagiellonian University, Cracow, PolandMScSteroid hydroxylasesGraduate Student
-
Past2009-10, MScJagiellonian University, PolandBSc2009The structural diversity of TetR transcriptional regulatorsDNA nexus - Precision Medicine, San Francisco, USA
-
Present2001-09, PhD
2009-12, Postdoc
2012-present, Research ScientistUniversity of Science and Technology of ChinaBSc2001Data Mining of Metal Ion Environments Present in Protein StructuresResearch Scientist, University of Virginia -
Past2003-07, PhD
2007-11, Postdoc
2011-15, InstructorJuniata College, PABSc, PhD1998The Xtaldb crystallization expert system and its application to the structure of the 5'-nucleotidase YfbRCCRi (Commonwealth Computer Research, Inc), Charlottesville, VA
| Legend |
|---|
| Current Lab Members |
| Independent Funding |
| Current Lab Member with Independent Funding |
| Current position is academic |
| Current position is in industry |
| Current position is in health care |
Awards received by Minor Lab members
Mateusz Czub
Robert R. Wagner Fellowship
(2020)
Biomedical Sciences Graduate Program
Mateusz Czub
2020 Travel Award
(2020)
Biophysical Society
64th Annual Meeting in San Diego
Barat Venkataramany
Chemistry Departmental Undergraduate Teaching Award
(2019)
UVA Chemistry Dept
2019
Charles Miks
Chemistry Departmental Award for Excellence
(2019)
UVA Chemistry Dept
2019
Barat Venkataramany
Harrison Undergraduate Research Award
(2018)
University of Virginia Center for Undergraduate Excellence
Monika Grabowska
Beckman Scholarship
(2018)
University of Virginia
Ethan Steen
Harrison Undergraduate Research Award
(2018)
University of Virginia Center for Undergraduate Excellence
Kasia Handing
Margaret C. Etter Student Lecture Award
(2015)
American Crystallographic Association
65th ACA Meeting - Philadelphia, PA
Heping Zheng
Young Observers Travel Fellowship
(2014)
U.S. National Committee for Crystallography
IUCr Congress XXIII - Montreal, Canada
Przemek Porebski
Best Graduate Student Poster Award
(2013)
43rd Mid-Atlantic Macromolecular Crystallography Meeting, Durham, NC
Karolina Majorek
Young Scientist Travel Grant
(2013)
American Crystallographic Association
63rd ACA Meeting - Honolulu, HI
Heping Zheng
Best Poster Award -with Ivan Shabalin
(2013)
43rd Mid-Atlantic Macromolecular Crystallography Meeting - Durham, NC
Ivan Shabalin
Best Poster Award - with Heping Zheng
(2013)
43rd Mid-Atlantic Macromolecular Crystallography Meeting - Durham, NC
Heping Zheng
Outstanding Graduate Student Award
(2009)
University of Virginia Structural, Computational Biology & Biophysics
Matthew Zimmerman
Best Poster Award
(2007)
37th Mid-Atlantic Macromolecular Crystallography Meeting - Charlottesville, VA
Matthew Zimmerman
Crystallography Travel Award
(2005)
U.S. National Committee for Crystallography
IUCr Congress XX - Florence, Italy