• Training Period: 2018, 2019-
  • Prior Institution: Poznan University of Technology
  • Prior Degree: Ph.D.
  • Project Title: Ligand Placement using Machine Learning
  • Current Position: Assistant Professor in the Institute of Computing Science at Poznan University of Technology

Publications with the Minor Lab

  1. Brzezinski D, Porebski PJ, Kowiel M, Macnar JM, Minor W (2021)
    Recognizing and validating ligands with CheckMyBlob.
    Nucleic Acids Res 49: W86-W92. [DOI:10.1093/nar/gkab296] [Pub Med ID: 33905501] [Pub Med Central ID: PMC8262754]
  2. Grabowski M, Macnar JM, Cymborowski M, Cooper DR, Shabalin IG, Gilski M, Brzezinski D, Kowiel M, Dauter Z, Rupp B, Wlodawer A, Jaskolski M, Minor W (2021)
    Rapid response to emerging biomedical challenges and threats.
    IUCrJ 8: 395-407. [DOI:10.1107/S2052252521003018] [Pub Med ID: 33953926] [Pub Med Central ID: PMC8086160] Times cited: 2
  3. Czyewski AC, Krawiec FK, Brzezinski D, Porebski PJ, Minor W (2021)
    Detecting anomalies in X-ray diffraction images using convolutional neural networks
    Expert Syst. Appl [DOI:10.1016/j.eswa.2021.114740]
  4. Grabowski M, Cooper DR, Brzezinski D, Macnar JM, Shabalin IG, Cymborowski M, Otwinowski Z, Minor W (2021)
    Synchrotron Radiation as a Tool for Macromolecular X-Ray Crystallography: a XXI Century Perspective.
    Nucl Instrum Methods Phys Res B 489: 30-40. [DOI:10.1016/j.nimb.2020.12.016] [Pub Med ID: 33603257] [Pub Med Central ID: PMC7886262]
  5. Brzezinski D, Kowiel M, Cooper DR, Cymborowski M, Grabowski M, Wlodawer A, Dauter Z, Shabalin IG, Gilski M, Rupp B, Jaskolski M, Minor W (2020)
    Covid-19.bioreproducibility.org: A web resource for SARS-CoV-2-related structural models.
    Protein Sci 30: 115-124. [DOI:10.1002/pro.3959] [Pub Med ID: 32981130] [Pub Med Central ID: PMC7537053] Times cited: 9
  6. Shabalin IG, Czub MP, Majorek KA, Brzezinski D, Grabowski M, Cooper DR, Panasiuk M, Chruszcz M, Minor W (2020)
    Molecular determinants of vascular transport of dexamethasone in COVID-19 therapy.
    IUCrJ [DOI:10.1107/S2052252520012944] [Pub Med ID: 33063792] [Pub Med Central ID: PMC7553145] Times cited: 6
  7. Wlodawer A, Dauter Z, Shabalin IG, Gilski M, Brzezinski D, Kowiel M, Minor W, Rupp B, Jaskolski M (2020)
    Ligand-centered assessment of SARS-CoV-2 drug target models in the Protein Data Bank.
    FEBS J 287: 3703-3718. [DOI:10.1111/febs.15366] [Pub Med ID: 32418327] [Pub Med Central ID: PMC7276724] Times cited: 21
  8. Brzezinski D, Dauter Z, Minor W, Jaskolski M (2020)
    On the evolution of the quality of macromolecular models in the PDB.
    FEBS J 287: 2685-2698. [DOI:10.1111/febs.15314] [Pub Med ID: 32311227] [Pub Med Central ID: PMC7340579] Times cited: 6
    F1000 Recommended Publication
  9. Kowiel M, Brzezinski D, Porebski PJ, Shabalin IG, Jaskolski M, Minor W (2019)
    Automatic recognition of ligands in electron density by machine learning.
    Bioinformatics 35: 452-461. [DOI:10.1093/bioinformatics/bty626] [Pub Med ID: 30016407] [Pub Med Central ID: PMC6361236] Times cited: 11