Marcin Cymborowski

Research Assistant


Publications with the Minor Lab

  1. Grabowski M, Langner KM, Cymborowski M, Porebski PJ, Sroka P, Zheng H, Cooper DR, Zimmerman MD, Elsliger MA, Burley SK, Minor W (2016)
    A public database of macromolecular diffraction experiments.
    Acta crystallographica. Section D, Structural biology 72: 1181-1193 Times cited: 3 [Pub Med ID: 27841751] [Pub Med Central ID: PMC5108346]
  2. Niedzialkowska E, Gasiorowska O, Handing KB, Majorek KA, Porebski PJ, Shabalin IG, Zasadzinska E, Cymborowski M, Minor W (2016)
    Protein purification and crystallization artifacts: The tale usually not told.
    Protein science : a publication of the Protein Society 25: 720-33 Times cited: 3 [Pub Med ID: 26660914] [Pub Med Central ID: PMC4815408]
  3. Porebski PJ, Cymborowski M, Pasenkiewicz-Gierula M, Minor W (2016)
    Fitmunk: improving protein structures by accurate, automatic modeling of side-chain conformations.
    Acta crystallographica. Section D, Structural biology 72: 266-80 Times cited: 4 [Pub Med ID: 26894674] [Pub Med Central ID: PMC4756610]
  4. Domagalski MJ, Tkaczuk KL, Chruszcz M, Skarina T, Onopriyenko O, Cymborowski M, Grabowski M, Savchenko A, Minor W (2013)
    Structure of isochorismate synthase DhbC from Bacillus anthracis.
    Acta crystallographica. Section F, Structural biology and crystallization communications 69: 956-61 [Pub Med ID: 23989140] [Pub Med Central ID: PMC3758140]
  5. Otwinowski Z, Minor W, Borek D, Cymborowski M (2012)
    Denzo and Scalepack (2nd ed).
    International Tables For Crystallography, Volume F F: 282-295
  6. Knapik AA, Petkowski JJ, Otwinowski Z, Cymborowski MT, Cooper DR, Chruszcz M, Krajewska WM, Minor W (2012)
    Structure of Escherichia coli RutC, a member of the YjgF family and putative aminoacrylate peracid reductase of the rut operon.
    Acta crystallographica. Section F, Structural biology and crystallization communications 68: 1294-9 Times cited: 5 [Pub Med ID: 23143235] [Pub Med Central ID: PMC3515367]
  7. Shumilin IA, Cymborowski M, Chertihin O, Jha KN, Herr JC, Lesley SA, Joachimiak A, Minor W (2012)
    Identification of unknown protein function using metabolite cocktail screening.
    Structure (London, England : 1993) 20: 1715-25 Times cited: 17 [Pub Med ID: 22940582] [Pub Med Central ID: PMC3472112]
  8. Knapik AA, Petkowski JJ, Otwinowski Z, Cymborowski MT, Cooper DR, Majorek KA, Chruszcz M, Krajewska WM, Minor W (2012)
    A multi-faceted analysis of RutD reveals a novel family of α/β hydrolases.
    Proteins 80: 2359-68 Times cited: 2 [Pub Med ID: 22641504] [Pub Med Central ID: PMC3459670]
  9. Hou J, Wojciechowska K, Zheng H, Chruszcz M, Cooper DR, Cymborowski M, Skarina T, Gordon E, Luo H, Savchenko A, Minor W (2012)
    Structure of a short-chain dehydrogenase/reductase from Bacillus anthracis.
    Acta crystallographica. Section F, Structural biology and crystallization communications 68: 632-7 Times cited: 1 [Pub Med ID: 22684058] [Pub Med Central ID: PMC3370898]
  10. Porebski PJ, Klimecka M, Chruszcz M, Nicholls RA, Murzyn K, Cuff ME, Xu X, Cymborowski M, Murshudov GN, Savchenko A, Edwards A, Minor W (2012)
    Structural characterization of Helicobacter pylori dethiobiotin synthetase reveals differences between family members.
    The FEBS journal 279: 1093-105 Times cited: 4 [Pub Med ID: 22284390] [Pub Med Central ID: PMC3392494]
  11. Filippova EV, Chruszcz M, Cymborowski M, Gu J, Savchenko A, Edwards A, Minor W (2011)
    Crystal structure of a putative transcriptional regulator SCO0520 from Streptomyces coelicolor A3(2) reveals an unusual dimer among TetR family proteins.
    Journal of structural and functional genomics 12: 149-57 Times cited: 3 [Pub Med ID: 21625866] [Pub Med Central ID: PMC4413006]
  12. Klimecka MM, Chruszcz M, Font J, Skarina T, Shumilin I, Onopryienko O, Porebski PJ, Cymborowski M, Zimmerman MD, Hasseman J, Glomski IJ, Lebioda L, Savchenko A, Edwards A, Minor W (2011)
    Structural analysis of a putative aminoglycoside N-acetyltransferase from Bacillus anthracis.
    Journal of molecular biology 410: 411-23 Times cited: 6 [Pub Med ID: 21601576] [Pub Med Central ID: PMC3131501]
  13. Cymborowski M, Klimecka M, Chruszcz M, Zimmerman MD, Shumilin IA, Borek D, Lazarski K, Joachimiak A, Otwinowski Z, Anderson W, Minor W (2010)
    To automate or not to automate: this is the question.
    Journal of structural and functional genomics 11: 211-21 Times cited: 17 [Pub Med ID: 20526815] [Pub Med Central ID: PMC2921494]
  14. Borek D, Cymborowski M, Machius M, Minor W, Otwinowski Z (2010)
    Diffraction data analysis in the presence of radiation damage.
    Acta crystallographica. Section D, Biological crystallography 66: 426-36 Times cited: 27 [Pub Med ID: 20382996] [Pub Med Central ID: PMC2852307]
  15. Chang C, Coggill P, Bateman A, Finn RD, Cymborowski M, Otwinowski Z, Minor W, Volkart L, Joachimiak A (2009)
    The structure of pyogenecin immunity protein, a novel bacteriocin-like immunity protein from Streptococcus pyogenes.
    BMC structural biology 9: 75 Times cited: 2 [Pub Med ID: 20017931] [Pub Med Central ID: PMC2806384]
  16. Wang S, Kirillova O, Chruszcz M, Gront D, Zimmerman MD, Cymborowski MT, Shumilin IA, Skarina T, Gorodichtchenskaia E, Savchenko A, Edwards AM, Minor W (2009)
    The crystal structure of the AF2331 protein from Archaeoglobus fulgidus DSM 4304 forms an unusual interdigitated dimer with a new type of alpha + beta fold.
    Protein science : a publication of the Protein Society 18: 2410-9 Times cited: 2 [Pub Med ID: 19768810] [Pub Med Central ID: PMC2788295]
  17. Chruszcz M, Zimmerman MD, Wang S, Koclega KD, Zheng H, Evdokimova E, Kudritska M, Cymborowski M, Savchenko A, Edwards A, Minor W (2008)
    Function-biased choice of additives for optimization of protein crystallization - the case of the putative thioesterase PA5185 from Pseudomonas aeruginosa PAO1.
    Crystal growth & design 8: 4054-4061 Times cited: 2 [Pub Med ID: 19898606] [Pub Med Central ID: PMC2700756]
  18. Cymborowski M, Chruszcz M, Dauter Z, Minor W (2007)
    3-Iodo-L-tyrosine hemihydrate.
    Acta crystallographica. Section E, Structure reports online 63: O1557-O1559 Times cited: 1
  19. Zheng H, Gawlicka-Chruszcz A, Cymborowski M, Minor W (2007)
    trans-1-Hydroxycyclopentan-2-aminium chloride.
    Acta crystallographica. Section E, Structure reports online 63: O2697-O2698
  20. Dong A, Xu X, Edwards AM, , , Chang C, Chruszcz M, Cuff M, Cymborowski M, Di Leo R, Egorova O, Evdokimova E, Filippova E, Gu J, Guthrie J, Ignatchenko A, Joachimiak A, Klostermann N, Kim Y, Korniyenko Y, Minor W, Que Q, Savchenko A, Skarina T, Tan K, Yakunin A, Yee A, Yim V, Zhang R, Zheng H, Akutsu M, Arrowsmith C, Avvakumov GV, Bochkarev A, Dahlgren LG, Dhe-Paganon S, Dimov S, Dombrovski L, Finerty P, Flodin S, Flores A, Gräslund S, Hammerström M, Herman MD, Hong BS, Hui R, Johansson I, Liu Y, Nilsson M, Nedyalkova L, Nordlund P, Nyman T, Min J, Ouyang H, Park HW, Qi C, Rabeh W, Shen L, Shen Y, Sukumard D, Tempel W, Tong Y, Tresagues L, Vedadi M, Walker JR, Weigelt J, Welin M, Wu H, Xiao T, Zeng H, Zhu H (2007)
    In situ proteolysis for protein crystallization and structure determination.
    Nature methods 4: 1019-21 Times cited: 130 [Pub Med ID: 17982461] [Pub Med Central ID: PMC3366506]
  21. Koclega KD, Chruszcz M, Zimmerman MD, Cymborowski M, Evdokimova E, Minor W (2007)
    Crystal structure of a transcriptional regulator TM1030 from Thermotoga maritima solved by an unusual MAD experiment.
    Journal of structural biology 159: 424-32 Times cited: 7 [Pub Med ID: 17588774] [Pub Med Central ID: PMC2093942]
  22. Petkowski JJ, Chruszcz M, Zimmerman MD, Zheng H, Skarina T, Onopriyenko O, Cymborowski MT, Koclega KD, Savchenko A, Edwards A, Minor W (2007)
    Crystal structures of TM0549 and NE1324--two orthologs of E. coli AHAS isozyme III small regulatory subunit.
    Protein science : a publication of the Protein Society 16: 1360-7 Times cited: 12 [Pub Med ID: 17586771] [Pub Med Central ID: PMC2206681]
  23. Zuo Y, Zheng H, Wang Y, Chruszcz M, Cymborowski M, Skarina T, Savchenko A, Malhotra A, Minor W (2007)
    Crystal structure of RNase T, an exoribonuclease involved in tRNA maturation and end turnover.
    Structure (London, England : 1993) 15: 417-28 Times cited: 27 [Pub Med ID: 17437714] [Pub Med Central ID: PMC1907377]
  24. Kirillova O, Chruszcz M, Shumilin IA, Skarina T, Gorodichtchenskaia E, Cymborowski M, Savchenko A, Edwards A, Minor W (2007)
    An extremely SAD case: structure of a putative redox-enzyme maturation protein from Archaeoglobus fulgidus at 3.4 A resolution.
    Acta crystallographica. Section D, Biological crystallography 63: 348-54 Times cited: 22 [Pub Med ID: 17327672]
  25. Koclega KD, Chruszcz M, Gawlicka-Chruszcz A, Cymborowski M, Minor W (2007)
    3-(1-Pyridinio)propanesulfonate and 3-(benzyldimethylammonio)propanesulfonate monohydrate.
    Acta crystallographica. Section C, Crystal structure communications 63: o114-6 Times cited: 3 [Pub Med ID: 17284802]
  26. Borek D, Ginell SL, Cymborowski M, Minor W, Otwinowski Z (2007)
    The many faces of radiation-induced changes.
    Journal of synchrotron radiation 14: 24-33 Times cited: 39 [Pub Med ID: 17211069]
  27. Zimmerman MD, Chruszcz M, Cymborowski M, Zheng HP, Minor W (2006)
    Disodium 4-nitrophenylphosphate hexahydrate.
    Acta crystallographica. Section E, Structure reports online 62: M884-M886 Times cited: 1
  28. Doyle CR, Zimmerman MD, Chruszcz M, Cymborowski M, Gawlicka-Chruszcz A, Minor W (2006)
    Crystal structure of 6-(4-difluoromethoxy-3-methoxyphenyl)-3(2H)-pyridazinone,C12H10F2N2O3.
    Zeitschrift fur Kristallographie 221: 359-360
  29. Gawlicka-Chruszcz A, Zheng H, Hyacinth M, Cymborowski M, Sabat M, Minor W (2006)
    Crystal structure of 2,6-dichlorobenzaldehyde,C7H4Cl2O.
    Zeitschrift fur Kristallographie 221: 545-546 Times cited: 2
  30. Minor W, Cymborowski M, Otwinowski Z, Chruszcz M (2006)
    HKL-3000: the integration of data reduction and structure solution--from diffraction images to an initial model in minutes.
    Acta crystallographica. Section D, Biological crystallography 62: 859-66 Times cited: 651 [Pub Med ID: 16855301]
  31. Chruszcz M, Zheng HP, Cymborowski M, Gawlicka-Chruszcz A, Minor W (2005)
    3-(Morpholinium-1-yl)propanesulfonate.
    Acta crystallographica. Section E, Structure reports online 61: O3190-O3191 Times cited: 4
  32. Flanagan JF, Mi LZ, Chruszcz M, Cymborowski M, Clines KL, Kim Y, Minor W, Rastinejad F, Khorasanizadeh S (2005)
    Double chromodomains cooperate to recognize the methylated histone H3 tail.
    Nature 438: 1181-5 Times cited: 312 [Pub Med ID: 16372014]
  33. Chruszcz M, Cymborowski M, Gawlicka-Chruszcz A, Yasukawa S, Ferrara JD, Minor W (2004)
    L-Methioninium chloride and L-selenomethioninium chloride at 103 K.
    Acta crystallographica. Section C, Crystal structure communications 60: o868-71 Times cited: 2 [Pub Med ID: 15579969]
  34. Minor W, Cymborowski M, Otwinowski Z (2002)
    Automatic system for crystallographic data collection and analysis.
    Acta Physica Polonica A 101(5): 613-619 Times cited: 21
  35. Tomchick DR, Phan P, Cymborowski M, Minor W, Holman TR (2001)
    Structural and functional characterization of second-coordination sphere mutants of soybean lipoxygenase-1.
    Biochemistry 40: 7509-17 Times cited: 94 [Pub Med ID: 11412104]

Structures with the Minor Lab Go to top